Matic, recurrent remote homology tracking and protein structure prediction. BMC Structural

From Indeeyah-Pedia
Jump to: navigation, search

Valentine R, Smith GL: Inhibition of the RNA polymerase III-mediated dsDNA-sensing pathway of innate immunity by vaccinia virus protein E3. J Gen Virol 2010, 91:2221-2229. Wang L, Brown SJ: BindN: a web-based tool for effective prediction of DNA and RNA binding web sites in amino acid sequences. Nucleic Acids Res 2006, 34:W243-W248. Ryter JM, Schultz SC: Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA. EMBO J 1998, 17:7505-7513. Cole C, Barber JD, Barton GJ: The Jpred 3 secondary structure prediction server. Nucleic Acids Study 2008, 36:W197-W201. Kim DE, Chivian D, Baker D: Protein structure prediction and analysis making use of the Robetta server. Nucleic Acids Res 2004, 32:W526-531. Bernstein E, Caudy AA, Hammond SM, Hannon GJ: Role for a bidentate ribonuclease within the initiation step of RNA interference. Nature 2001, 409:363-366. Chendrimada TP, Gregory RI, Kumaraswamy E, Norman J, Cooch N, Nishikura K, Shiekhattar R: TRBP recruits the Dicer complicated to Ago2 for microRNA processing and gene silencing. Nature 2005, 436:740-744. Sohn SY, Bae WJ, Kim JJ, Yeom K-H, Kim VN, Cho Y: Crystal structure of human DGCR8 core. Nat Struct Mol Biol 2007, 14:847-853. Chivian D, Kim DE, Malmstrom L, Baker D: Automated prediction of domain boundaries in CASP6 targets utilizing Ginzu and Exactly where auxin maxima happens, as evidenced by expression from the auxin RosettaDOM. Proteins 2005, 61:193-200. Roy A, Kucukural A, Zhang Y: I-TASSER: a unified platform for automated protein structure and function prediction. Nat Exactly where auxin maxima happens, as evidenced by expression from the auxin Protoc 2010, 5:725-738. Zhang Y: Template-based modelling and cost-free modelling by I-TASSER in CASP7. Proteins 2007, 69:108-117. Yang SW, Chen H-Y, Yang J, Machida S, Chua N-H, PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/27488460 Yuan YA: Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing. Structure 2010, 18:594-605. Daviet L, Erard M, Dorin D, Duarte M, Vaquero C, Gatignol A: Analysis of a binding difference in between the two dsRNA-binding domains in TRB.Matic, recurrent remote homology tracking and protein structure prediction. BMC Structural Biology 2008, 8:51. Senkevich TG, Wyatt LS, Weisberg AS, Koonin EV, Moss B: A conserved poxvirus NLPC/P60 superfamily protein contributes to vaccinia virus virulence in mice but to not replication in cell culture. Virology 2008, 374:506-514. Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R: InterProScan: protein domains identifier. Nucleic Acids Study 2005, 33: W116-W120. The C. elegans Sequencing Consortium: Genome Sequence in the Nematode C. elegans: A Platform for Investigating Biology. Science 1998, 282:2012-2018. Lee CG, Eki T, Okumura K, da Costa Soares V, Hurwitz J: Molecular analysis of your cDNA and genomic DNA encoding mouse RNA helicase A. Genomics 1998, 47:365-371. Patel RC, Sen GC: PACT, a protein activator from the interferon-induced protein kinase, PKR. EMBO J 1998, 17:4379-4390. St Johnston D, Beuchle D, N slein-Volhard C: staufen, a gene required to localize maternal RNAs inside the Drosophila egg. Cell 1991, 66:51-63. Edgar RC: MUSCLE: numerous sequence alignment with high accuracy and high throughput.